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Listings   Molecule viewers  Multiple Alignment   Phylogenetic Analysis   Integrated Sequence Tools   Miscellaneous  Protein Threading
Integrated Sequence Tools  
BioEdit BioEditis a biological sequence alignment editor written for Windows 95/98/NT.
SeqTransform last updated 5/5/00 My sequence editing program, requires jdk1.2.1 or higher to run
Phylogenetics Software
tRNAscan-SE tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
Molecule Viewers
Cn3D 3.0 simultaneously displays structure, sequence, and alignment
Multiple Alignment
ClustalX One of the main multiple alignment workhorses.
Phylogenetic Analysis
GAML A genetic algorithm for maximum likelihood phylogeny inference using nucleotide sequence data
TreeView Tree viewing software which reads many formats Help Manual
Protein Threading
LOOPP Does potential optimization & alignments, by seq/seq, seq/struct, struct/struct alignments.

Comments and Suggestions
Brooke D. Peterson-Burch.
Copyright 1998-2002 BioI. All rights reserved.
Copyright 1998-2002 Brooke D. Peterson-Burch. All rights reserved.
Information in this document is subject to change without notice.
Any other products and companies referred to herein are trademarks
or registered trademarks of their respective companies or mark holders.

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  PAUP A software package for inference of evolutionary trees. (Mac, WinX, UNIX/VMS, DOS) Must buy to use 8-14-00   Irfanview very versatile freeware image viewing software 8-14-00